Assembly stats
A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.
Report
generated on 2025-09-17, 09:27 WIB
based on data in:
/home/randi/Analysis/AMRid/nanopore/assembly_stat
General Statistics
| Sample Name | N50 (Kbp) | Assembly Length (Mbp) |
|---|---|---|
| SRR17645345 | 4887.6Kbp | 5.1Mbp |
| SRR24451070 | 5367.0Kbp | 5.8Mbp |
| SRR9987849 | 1385.0Kbp | 5.6Mbp |
QUAST
Quality assessment tool for genome assemblies.URL: http://quast.bioinf.spbau.ruDOI: 10.1093/bioinformatics/btt086
Assembly Statistics
| Sample Name | N50 (Kbp) | L50 (K) | Largest contig (Kbp) | Length (Mbp) |
|---|---|---|---|---|
| SRR17645345 | 4887.6Kbp | 0.0K | 4887.6Kbp | 5.1Mbp |
| SRR24451070 | 5367.0Kbp | 0.0K | 5367.0Kbp | 5.8Mbp |
| SRR9987849 | 1385.0Kbp | 0.0K | 1689.7Kbp | 5.6Mbp |
Number of Contigs
This plot shows the number of contigs found for each assembly, broken down by length.