Assembly stats

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        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

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        About MultiQC

        This report was generated using MultiQC, version 1.25.1

        You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

        For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

        You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/MultiQC/MultiQC

        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        Assembly stats

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2025-09-17, 09:27 WIB based on data in: /home/randi/Analysis/AMRid/nanopore/assembly_stat

        General Statistics

        Showing 0/3 rows and 2/2 columns.
        Sample NameN50 (Kbp)Assembly Length (Mbp)
        SRR17645345
        4887.6Kbp
        5.1Mbp
        SRR24451070
        5367.0Kbp
        5.8Mbp
        SRR9987849
        1385.0Kbp
        5.6Mbp

        QUAST

        Quality assessment tool for genome assemblies.URL: http://quast.bioinf.spbau.ruDOI: 10.1093/bioinformatics/btt086

        Assembly Statistics

        Showing 0/3 rows and 4/4 columns.
        Sample NameN50 (Kbp)L50 (K)Largest contig (Kbp)Length (Mbp)
        SRR17645345
        4887.6Kbp
        0.0K
        4887.6Kbp
        5.1Mbp
        SRR24451070
        5367.0Kbp
        0.0K
        5367.0Kbp
        5.8Mbp
        SRR9987849
        1385.0Kbp
        0.0K
        1689.7Kbp
        5.6Mbp

        Number of Contigs

        This plot shows the number of contigs found for each assembly, broken down by length.

        Created with MultiQC

        MultiQC v1.25.1 - Written by Phil Ewels, available on GitHub.

        This report uses Plotly, jQuery, jQuery UI, Bootstrap and FileSaver.js.